* "Pilgrimage" does not fade in, but rather begins building without any volume adjusting
* "The Mark Has Been Made" does not feature the introduction of "10 Miles High" fading in at the end (the hidden bit of music in the pre-gap of "Please" on the CD version)
* "I'm Looking Forward to Joining You, Finally" features an extra bar of begins with the full strings and an extra bar of percussion before the lyricssample
* "Ripe" does not include the "With Decay" ending section, but rather fades out as the slinking guitars play the main riff
* "The Wretched," "We're in This Together," "Even Deeper," "Pilgrimage," "The Mark Has Been Made," "10 Miles High," "The New Flesh," and "I'm Looking Forward to Joining You, Finally" all do not crossfade as on the CD version, because these songs either end or begin their respective sides